Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488090_1326 | Not Available | Negative | 1706655 - 1707284 | 24813.6 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488090_1327 | Not Available | Negative | 1707580 - 1708263 | 24167.2 |
| two component transcriptional regulator, lyttr family | SAMN04488090_1328 | Not Available | Negative | 1708328 - 1709086 | 29223.1 |
| histidine kinase | SAMN04488090_1329 | Not Available | Negative | 1709099 - 1710136 | 39274.6 |
| putative auto-transporter adhesin, head gin domain | SAMN04488090_1330 | Not Available | Negative | 1710114 - 1710935 | 29154.7 |
| putative auto-transporter adhesin, head gin domain | SAMN04488090_1331 | Not Available | Negative | 1711099 - 1711815 | 26279.8 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488090_1332 | Not Available | Positive | 1712043 - 1712933 | 32991.1 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN04488090_1333 | Not Available | Positive | 1713051 - 1714289 | 45073.4 |
| cytochrome c, mono-and diheme variants | SAMN04488090_1334 | Not Available | Positive | 1714342 - 1714761 | 14674.4 |
| monovalent cation:h+ antiporter, cpa1 family | SAMN04488090_1335 | Not Available | Negative | 1714762 - 1716372 | 59775.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
