Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted o-methyltransferase yrrm | SAMN04488090_0119 | Not Available | Positive | 148509 - 149090 | 21063.9 |
| 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase | SAMN04488090_0120 | Not Available | Positive | 149533 - 150570 | 37411.2 |
| hypothetical protein | SAMN04488090_0121 | Not Available | Negative | 150629 - 151048 | 15528.4 |
| protein of unknown function | SAMN04488090_0122 | Not Available | Negative | 151208 - 151672 | 17048.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_0123 | Not Available | Positive | 152211 - 155246 | 110130.0 |
| ragb/susd domain-containing protein | SAMN04488090_0124 | Not Available | Positive | 155257 - 156585 | 48440.0 |
| zinc carboxypeptidase | SAMN04488090_0125 | Not Available | Positive | 156598 - 159183 | 95180.2 |
| nadph:quinone reductase | SAMN04488090_0126 | Not Available | Negative | 159296 - 160249 | 33942.7 |
| transcriptional regulator, hxlr family | SAMN04488090_0127 | Not Available | Positive | 160334 - 160774 | 16952.7 |
| helix-turn-helix domain-containing protein | SAMN04488090_0128 | Not Available | Positive | 160793 - 161695 | 34347.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
