Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase | SAMN04488090_1266 | Not Available | Negative | 1635132 - 1636661 | 55902.3 |
| transcriptional regulator, arac family | SAMN04488090_1267 | Not Available | Negative | 1636750 - 1637682 | 35233.2 |
| iron complex outermembrane recepter protein | SAMN04488090_1268 | Not Available | Positive | 1637885 - 1639915 | 74796.3 |
| xanthine and co dehydrogenase maturation factor, xdhc/coxf family | SAMN04488090_1269 | Not Available | Positive | 1639920 - 1641020 | 40177.1 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN04488090_1270 | Not Available | Positive | 1641227 - 1642297 | 40781.8 |
| methionine synthase (b12-dependent) | SAMN04488090_1271 | Not Available | Negative | 1642357 - 1646178 | 141805.0 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SAMN04488090_1272 | Not Available | Negative | 1646320 - 1647603 | 46967.2 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488090_1273 | Not Available | Positive | 1647682 - 1649931 | 81434.6 |
| prolipoprotein diacylglyceryl transferase | SAMN04488090_1274 | Not Available | Positive | 1650004 - 1650855 | 32671.2 |
| hypothetical protein | SAMN04488090_1275 | Not Available | Negative | 1650815 - 1650979 | 6245.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
