Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold shock protein, cspa family | SAMN04488090_1105 | Not Available | Positive | 1434385 - 1434663 | 10461.7 |
| hypothetical protein | SAMN04488090_1106 | Not Available | Positive | 1434894 - 1435616 | 27424.3 |
| protein of unknown function | SAMN04488090_1107 | Not Available | Positive | 1435613 - 1436326 | 27895.2 |
| trna pseudouridine38-40 synthase | SAMN04488090_1108 | Not Available | Positive | 1436351 - 1437106 | 28497.5 |
| molybdenum cofactor cytidylyltransferase | SAMN04488090_1109 | Not Available | Positive | 1437094 - 1437693 | 21636.1 |
| 'cold-shock' dna-binding domain-containing protein | SAMN04488090_1110 | Not Available | Positive | 1437874 - 1438887 | 38486.3 |
| moxr-like atpase | SAMN04488090_1111 | Not Available | Negative | 1438940 - 1439902 | 35878.4 |
| periplasmic chaperone for outer membrane proteins sura | SAMN04488090_1112 | Not Available | Negative | 1439963 - 1441312 | 51542.0 |
| peptidyl-prolyl cis-trans isomerase sura | SAMN04488090_1113 | Not Available | Negative | 1441413 - 1443707 | 86763.2 |
| hypothetical protein | SAMN04488090_1114 | Not Available | Negative | 1443788 - 1444438 | 23978.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
