Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted zn-dependent peptidase | SAMN04488090_1075 | Not Available | Positive | 1403880 - 1405115 | 47015.4 |
| predicted o-methyltransferase yrrm | SAMN04488090_1076 | Not Available | Positive | 1405138 - 1405773 | 24164.2 |
| membrane-bound lytic murein transglycosylase d | SAMN04488090_1077 | Not Available | Positive | 1405854 - 1408142 | 83425.0 |
| protein of unknown function | SAMN04488090_1078 | Not Available | Positive | 1408211 - 1408780 | 21669.7 |
| methylated-dna-protein-cysteine methyltransferase related protein | SAMN04488090_1079 | Not Available | Positive | 1408773 - 1409096 | 11709.3 |
| iron-sulfur cluster assembly protein | SAMN04488090_1080 | Not Available | Negative | 1409213 - 1409539 | 11586.8 |
| methylmalonyl-coa epimerase | SAMN04488090_1081 | Not Available | Positive | 1409671 - 1410075 | 15046.9 |
| cystathionine beta-synthase | SAMN04488090_1082 | Not Available | Positive | 1410088 - 1411464 | 50483.3 |
| hypothetical protein | SAMN04488090_1083 | Not Available | Positive | 1411666 - 1412181 | 19143.2 |
| Trna-ser | Not Available | Not Available | Positive | 1412245 - 1412332 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
