Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein beta-barrel domain-containing protein | SAMN04488090_0994 | Not Available | Positive | 1314072 - 1314719 | 23384.1 |
| putative transcriptional regulator | SAMN04488090_0995 | Not Available | Negative | 1314806 - 1315393 | 21993.1 |
| transcriptional regulator, deor family | SAMN04488090_0996 | Not Available | Negative | 1315531 - 1316289 | 28110.1 |
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed/haloacid dehalogenase superfamily, subfamily ia, variant 1 with third motif having dx(3-4)d or dx(3-4)e | SAMN04488090_0997 | Not Available | Positive | 1316415 - 1317110 | 26090.1 |
| 5'(3')-deoxyribonucleotidase | SAMN04488090_0998 | Not Available | Positive | 1317107 - 1317646 | 20726.8 |
| fucose permease | SAMN04488090_0999 | Not Available | Positive | 1317643 - 1318797 | 40511.8 |
| carbonic anhydrase | SAMN04488090_1000 | Not Available | Negative | 1319330 - 1319962 | 24360.4 |
| sulfate permease, mfs superfamily | SAMN04488090_1001 | Not Available | Negative | 1319987 - 1321570 | 57046.4 |
| hypothetical protein | SAMN04488090_1002 | Not Available | Negative | 1321916 - 1323238 | 49123.1 |
| 5-oxoprolinase (atp-hydrolysing) | SAMN04488090_1003 | Not Available | Negative | 1323505 - 1327188 | 131756.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
