Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad dependent epimerase/dehydratase family protein | SAMN04488090_0089 | Not Available | Positive | 117606 - 118589 | 35681.1 |
| arac-type dna-binding protein | SAMN04488090_0090 | Not Available | Positive | 118629 - 119522 | 34439.2 |
| dna-binding transcriptional regulator, marr family | SAMN04488090_0091 | Not Available | Positive | 119874 - 120326 | 17147.6 |
| outer membrane protein tolc | SAMN04488090_0092 | Not Available | Positive | 120406 - 121713 | 48473.3 |
| membrane fusion protein, multidrug efflux system | SAMN04488090_0093 | Not Available | Positive | 121725 - 122810 | 40242.9 |
| hypothetical protein | SAMN04488090_0094 | Not Available | Positive | 122807 - 124402 | 58501.4 |
| dna-binding transcriptional regulator, marr family | SAMN04488090_0095 | Not Available | Positive | 124407 - 124832 | 15781.3 |
| type i phosphodiesterase / nucleotide pyrophosphatase | SAMN04488090_0096 | Not Available | Negative | 124888 - 126117 | 46595.4 |
| susd family protein | SAMN04488090_0097 | Not Available | Negative | 126180 - 127967 | 66194.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488090_0098 | Not Available | Negative | 127974 - 131174 | 117566.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
