Sarcina sp. DSM 11001

Gram-positiveCoccianaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Sarcina

Description

Sarcina sp. DSM 11001 is a Gram-positive, anaerobic bacterium characterized by its cocci shape. This species is notable for its ability to thrive in environments devoid of oxygen. Sarcina sp. typically exhibits a unique arrangement, forming clusters or packets, which is a distinctive feature of the genus. The bacterium has a single replicon, indicating a streamlined genetic structure. This trait can be significant in understanding its replication and genetic stability. Furthermore, Sarcina sp. DSM 11001 possesses flagella, which may contribute to its motility in anaerobic conditions, although the specific role of flagella in this context requires further investigation. The accession number for Sarcina sp. DSM 11001 is FNFZ00000000.1, which provides a reference for researchers seeking genetic information about this strain. In terms of ecological insight, the anaerobic lifestyle of Sarcina sp. suggests that it may play a role in specific environments, such as those found in deep-sea sediments or other anaerobic habitats, where it may contribute to the degradation of organic matter or participate in biogeochemical cycles. This can have implications for nutrient recycling and ecosystem dynamics in anaerobic environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusSarcina
SpeciesSarcina sp. DSM 11001
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sarcina sp. DSM 11001
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sarcina sp. DSM 11001 genome assembly, contig: Ga0059085_176,

Gene Summary

Adenine Count

1039283 bp

Thymine Count

999275 bp

Guanine Count

1070951 bp

Cytosine Count

1036771 bp

Genome Length

4151587 bp

Protein-coding Genes

3198 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dtdp-glucose 4,6-dehydrataseSAMN04487833_11253Not AvailablePositive2053979 - 205499839150.9
dtdp-4-dehydrorhamnose reductaseSAMN04487833_11254Not AvailablePositive2055292 - 205620633868.2
dtdp-4-dehydrorhamnose 3,5-epimeraseSAMN04487833_11255Not AvailablePositive2056575 - 205718323066.2
glycosyl transferase family 2SAMN04487833_11256Not AvailablePositive2057264 - 205806731545.9
membrane protein involved in the export of o-antigen and teichoic acidSAMN04487833_11257Not AvailablePositive2058337 - 205976452461.4
pd-(d/e)xk nuclease superfamily proteinSAMN04487833_11258Not AvailablePositive2059888 - 206160365790.8
glycosyl transferase family 2SAMN04487833_11259Not AvailablePositive2061729 - 206272438324.2
glycosyltransferase involved in cell wall bisynthesisSAMN04487833_11260Not AvailablePositive2063119 - 206423141476.7
o-antigen ligaseSAMN04487833_11261Not AvailableNegative2064495 - 206642671485.5
ndp-sugar epimerase, includes udp-glcnac-inverting 4,6-dehydratase flaa1 and capsular polysaccharide biosynthesis protein epscSAMN04487833_11262Not AvailablePositive2066968 - 206905878602.4

Displaying genes 1571 – 1580 of 3311 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.