Propionivibrio dicarboxylicus strain DSM 5885

anaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Rhodocyclales

Family

Rhodocyclaceae

Genus

Propionivibrio

Description

Propionivibrio dicarboxylicus strain DSM 5885 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This trait is crucial for its metabolic processes and ecological niche, as it suggests the organism may inhabit anaerobic environments, such as sediments or the gastrointestinal tracts of certain animals. The strain is characterized by a single replicon, which means it has a singular circular chromosome that carries the genetic information necessary for its survival and reproduction. This genetic structure can affect its adaptability and evolutionary strategies in response to environmental changes. The accession number for Propionivibrio dicarboxylicus strain DSM 5885 is FNCY00000000.1, which is vital for researchers looking to access its genomic data in biological databases. This information can facilitate further studies on its genetics, metabolism, and potential applications in biotechnology or microbiology. In summary, the anaerobic nature of Propionivibrio dicarboxylicus strain DSM 5885, along with its single replicon, positions it as a specialized organism adapted to low-oxygen environments. Its unique traits suggest it may play a role in specific ecological interactions or biogeochemical cycles, particularly in the degradation of organic matter in anaerobic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderRhodocyclales
FamilyRhodocyclaceae
GenusPropionivibrio
SpeciesPropionivibrio dicarboxylicus
Strainstrain DSM 5885

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Propionivibrio dicarboxylicus strain DSM 5885 genome assembly,

Gene Summary

Adenine Count

893779 bp

Thymine Count

861526 bp

Guanine Count

1365404 bp

Cytosine Count

1413342 bp

Genome Length

4534676 bp

Protein-coding Genes

4009 genes

Non-Coding Genes

117 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conserved hypothetical protein, cofd-relatedSAMN05660652_04015Not AvailableNegative4393402 - 439437035168.2
permease of the drug/metabolite transporter (dmt) superfamilySAMN05660652_04016Not AvailablePositive4394465 - 439541834144.5
lysr family transcriptional regulator, chromosome initiation inhibitorSAMN05660652_04017Not AvailableNegative4395393 - 439630432337.2
l-lysine exporter family protein lyse/argoSAMN05660652_04018Not AvailablePositive4396396 - 439701621657.9
o-acetyl-adp-ribose deacetylase (regulator of rnase iii), contains macro domainSAMN05660652_04019Not AvailableNegative4397013 - 439753417805.4
7, 8-dihydropterin-6-yl-methyl-4-(beta-d- ribofuranosyl)aminobenzene 5'-phosphate synthaseSAMN05660652_04020Not AvailableNegative4397540 - 439839730373.4
Tmrna,resume consensus sequence (at 209): tccaaacgccaacgatgaNot AvailableNot AvailablePositive4398404 - 4398742Not Available
cyclic nucleotide-binding domain-containing proteinSAMN05660652_04022Not AvailablePositive4398949 - 439944317870.6
dipicolinate synthase subunit aSAMN05660652_04023Not AvailablePositive4399440 - 440031230431.5
sulfoxide reductase heme-binding subunit yedzSAMN05660652_04024Not AvailableNegative4400309 - 440091422783.5

Displaying genes 4001 – 4010 of 4126 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.