Peptococcus niger strain DSM 20475

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Peptococcaceae

Genus

Peptococcus

Description

Peptococcus niger strain DSM 20475 is an anaerobic bacterium that exhibits a unique metabolic profile, thriving in environments devoid of oxygen. This strain is characterized by having a single replicon, which indicates a streamlined genetic structure that may contribute to its efficient anaerobic metabolism. The strain is cataloged with the accession number FNAF00000000.1, which allows for its identification and further study within microbial databases. Its classification as a member of the Peptococcus genus suggests that it may play a role in various ecological niches, particularly those involving organic matter decomposition. The anaerobic nature of Peptococcus niger highlights its potential significance in biogeochemical cycles, particularly in anaerobic digestion processes where microorganisms break down organic materials in the absence of oxygen. This capacity can be particularly beneficial in waste treatment systems, where the breakdown of organic pollutants is essential for maintaining environmental health. Understanding the characteristics of Peptococcus niger DSM 20475 can provide insights into the functional roles of anaerobic bacteria in various ecosystems, emphasizing their importance in nutrient cycling and organic matter degradation.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyPeptococcaceae
GenusPeptococcus
SpeciesPeptococcus niger
Strainstrain DSM 20475

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Peptococcus niger strain DSM 20475 genome assembly, contig:

Gene Summary

Adenine Count

501020 bp

Thymine Count

490588 bp

Guanine Count

491875 bp

Cytosine Count

482209 bp

Genome Length

1968473 bp

Protein-coding Genes

1818 genes

Non-Coding Genes

99 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional udp-n-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate n-acetyltransferaseSAMN04489866_11316Not AvailableNegative1718943 - 172029548271.5
4-diphosphocytidyl-2-c-methyl-d-erythritol kinaseSAMN04489866_11317Not AvailableNegative1720308 - 172119232105.0
Trna-leuNot AvailableNot AvailablePositive1721337 - 1721422Not Available
methylmalonate-semialdehyde dehydrogenaseSAMN04489866_11319Not AvailableNegative1721499 - 172297153276.3
macrolide transport system atp-binding/permease proteinSAMN04489866_11320Not AvailableNegative1723102 - 172474262762.9
Trna-cysNot AvailableNot AvailablePositive1725566 - 1725636Not Available
ferritinSAMN04489866_11322Not AvailableNegative1725776 - 172628520042.4
signal transduction histidine kinaseSAMN04489866_11323Not AvailableNegative1726379 - 172782753954.0
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN04489866_11324Not AvailableNegative1727830 - 172852826785.0
hypothetical proteinSAMN04489866_11325Not AvailableNegative1728530 - 172984349076.4

Displaying genes 1681 – 1690 of 1917 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.