Peptococcus niger strain DSM 20475

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Peptococcaceae

Genus

Peptococcus

Description

Peptococcus niger strain DSM 20475 is an anaerobic bacterium that exhibits a unique metabolic profile, thriving in environments devoid of oxygen. This strain is characterized by having a single replicon, which indicates a streamlined genetic structure that may contribute to its efficient anaerobic metabolism. The strain is cataloged with the accession number FNAF00000000.1, which allows for its identification and further study within microbial databases. Its classification as a member of the Peptococcus genus suggests that it may play a role in various ecological niches, particularly those involving organic matter decomposition. The anaerobic nature of Peptococcus niger highlights its potential significance in biogeochemical cycles, particularly in anaerobic digestion processes where microorganisms break down organic materials in the absence of oxygen. This capacity can be particularly beneficial in waste treatment systems, where the breakdown of organic pollutants is essential for maintaining environmental health. Understanding the characteristics of Peptococcus niger DSM 20475 can provide insights into the functional roles of anaerobic bacteria in various ecosystems, emphasizing their importance in nutrient cycling and organic matter degradation.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyPeptococcaceae
GenusPeptococcus
SpeciesPeptococcus niger
Strainstrain DSM 20475

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Peptococcus niger strain DSM 20475 genome assembly, contig:

Gene Summary

Adenine Count

501020 bp

Thymine Count

490588 bp

Guanine Count

491875 bp

Cytosine Count

482209 bp

Genome Length

1968473 bp

Protein-coding Genes

1818 genes

Non-Coding Genes

99 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative abc transport system atp-binding proteinSAMN04489866_10559Not AvailableNegative1111316 - 111199625404.6
signal transduction histidine kinaseSAMN04489866_10560Not AvailableNegative1112049 - 111290932955.7
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN04489866_10561Not AvailableNegative1112911 - 111356125273.5
phosphotransacetylaseSAMN04489866_10562Not AvailablePositive1113856 - 111483034497.5
ribosomal protein l11 methyltransferaseSAMN04489866_10563Not AvailablePositive1114938 - 111584032192.0
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseSAMN04489866_10564Not AvailablePositive1115843 - 111733353945.7
arginyl-trna synthetaseSAMN04489866_10565Not AvailablePositive1117349 - 111902561284.6
fructose-bisphosphate aldolaseSAMN04489866_10566Not AvailablePositive1119037 - 111989130510.6
fructose-1,6-bisphosphatase iiSAMN04489866_10567Not AvailablePositive1119904 - 112084532968.9
diaminopimelate decarboxylaseSAMN04489866_10568Not AvailablePositive1121295 - 112259647273.4

Displaying genes 1101 – 1110 of 1917 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.