Peptococcus niger strain DSM 20475

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Peptococcaceae

Genus

Peptococcus

Description

Peptococcus niger strain DSM 20475 is an anaerobic bacterium that exhibits a unique metabolic profile, thriving in environments devoid of oxygen. This strain is characterized by having a single replicon, which indicates a streamlined genetic structure that may contribute to its efficient anaerobic metabolism. The strain is cataloged with the accession number FNAF00000000.1, which allows for its identification and further study within microbial databases. Its classification as a member of the Peptococcus genus suggests that it may play a role in various ecological niches, particularly those involving organic matter decomposition. The anaerobic nature of Peptococcus niger highlights its potential significance in biogeochemical cycles, particularly in anaerobic digestion processes where microorganisms break down organic materials in the absence of oxygen. This capacity can be particularly beneficial in waste treatment systems, where the breakdown of organic pollutants is essential for maintaining environmental health. Understanding the characteristics of Peptococcus niger DSM 20475 can provide insights into the functional roles of anaerobic bacteria in various ecosystems, emphasizing their importance in nutrient cycling and organic matter degradation.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyPeptococcaceae
GenusPeptococcus
SpeciesPeptococcus niger
Strainstrain DSM 20475

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Peptococcus niger strain DSM 20475 genome assembly, contig:

Gene Summary

Adenine Count

501020 bp

Thymine Count

490588 bp

Guanine Count

491875 bp

Cytosine Count

482209 bp

Genome Length

1968473 bp

Protein-coding Genes

1818 genes

Non-Coding Genes

99 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s-layer homology domain-containing proteinSAMN04489866_104173Not AvailablePositive990251 - 99254585037.3
helix-turn-helix domain-containing proteinSAMN04489866_104174Not AvailablePositive992924 - 99327413532.5
transposase, is605 orfb family, central regionSAMN04489866_104175Not AvailablePositive993280 - 99405029043.4
endonuclease yncb, thermonuclease familySAMN04489866_104176Not AvailablePositive994222 - 99489624816.9
protein of unknown functionSAMN04489866_104177Not AvailablePositive995056 - 99585931637.5
dna-damage-inducible protein jSAMN04489866_104178Not AvailablePositive996230 - 99649910233.2
toxin yoebSAMN04489866_104179Not AvailablePositive996480 - 99674310317.4
histidine kinase-, dna gyrase b-, and hsp90-like atpaseSAMN04489866_104180Not AvailableNegative997051 - 99901575135.4
dna (cytosine-5)-methyltransferase 1SAMN04489866_104181Not AvailableNegative999008 - 100004238650.4
conserved repeat domain-containing protein/fimbrial isopeptide formation d2 domain-containing proteinSAMN04489866_104182Not AvailablePositive1000725 - 1005578176865.0

Displaying genes 1001 – 1010 of 1917 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.