Pseudomonas alcaliphila strain JCM 10630

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Ectopseudomonas

Description

Pseudomonas alcaliphila strain JCM 10630 is a rod-shaped bacterium characterized by its aerobic oxygen requirement. This strain is notable for its presence in specific habitats, including industrially contaminated soils and the rhizosphere of maize. The adaptation to these environments suggests a potential role in bioremediation or plant growth promotion, particularly in soils affected by pollution. The strain possesses true flagella, which facilitate motility, allowing it to navigate through its soil environment effectively. Additionally, Pseudomonas alcaliphila JCM 10630 has a single replicon, indicating a streamlined genetic structure that may be advantageous for rapid adaptation to environmental changes. The strain is cataloged under the accession number FNAE00000000.1, which provides a reference for researchers interested in studying its genetic and functional characteristics. The ecological implications of Pseudomonas alcaliphila JCM 10630 include its potential interactions within the maize rhizosphere, where it may contribute to nutrient cycling or assist in the degradation of contaminants, thereby promoting plant health and soil quality. In summary, Pseudomonas alcaliphila strain JCM 10630 exemplifies the significance of microbial diversity in industrially impacted ecosystems, highlighting its possible applications in environmental management and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusEctopseudomonas
SpeciesEctopseudomonas alcaliphila
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatindustrially contaminated soils; maize rhizosphere; soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas alcaliphila strain JCM 10630 genome assembly, contig:

Gene Summary

Adenine Count

999400 bp

Thymine Count

961382 bp

Guanine Count

1634924 bp

Cytosine Count

1686935 bp

Genome Length

5283714 bp

Protein-coding Genes

4786 genes

Non-Coding Genes

157 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05216575_106187Not AvailableNegative4029501 - 402978210282.8
Retron-type rna-directed dna polymeraseSAMN05216575_106188Not AvailableNegative4029786 - 403085040763.0
23s rrna-intervening sequence proteinSAMN05216575_106189Not AvailableNegative4031150 - 403150613222.3
Hypothetical proteinSAMN05216575_106190Not AvailableNegative4031561 - 403216622151.4
Hypothetical proteinSAMN05216575_106191Not AvailableNegative4032256 - 403286722096.8
Putative dna polymerase associated exonucleaseSAMN05216575_106192Not AvailableNegative4032890 - 403349822133.4
Putative dna segregation atpaseSAMN05216575_106193Not AvailableNegative4033562 - 403432327166.2
Hypothetical proteinSAMN05216575_106194Not AvailableNegative4034336 - 40345367476.81
Putative phage-type endonucleaseSAMN05216575_106195Not AvailableNegative4034551 - 403618259967.4
Rect-like domain proteinSAMN05216575_106196Not AvailableNegative4036169 - 403692428158.6

Displaying genes 21 – 30 of 4943 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

331 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 331 metabolites

Health Effects

No health effects information available for this bacterium.