Ruegeria marina strain CGMCC 1.9108

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria marina strain CGMCC 1.9108 is a Gram-negative, non-motile rod-shaped bacterium. This strain demonstrates mesophilic characteristics, with an optimal growth temperature of 37°C. The genetic structure of Ruegeria marina strain CGMCC 1.9108 is characterized by the presence of a single replicon, which is an important feature for its genomic stability and replication. Given its optimal temperature and mesophilic nature, Ruegeria marina strain CGMCC 1.9108 is likely well-adapted to moderate environmental conditions, potentially thriving in marine ecosystems where temperatures typically fluctuate around this range. The designation of Gram-negative indicates that this bacterium possesses a thinner peptidoglycan layer in its cell wall, which is characteristic of this group and may influence its interactions with other organisms and its environment. The accession number for this strain is FMZV00000000.1, which provides a reference for genomic studies and can facilitate comparative analysis with other strains or species within the Ruegeria genus. Biologically, the traits of Ruegeria marina strain CGMCC 1.9108 suggest it may play a role in marine nutrient cycling. Its mesophilic nature and adaptation to moderate temperatures might also indicate its potential involvement in ecological interactions within its habitat, such as breaking down organic materials or interacting with marine flora and fauna. Understanding the specific ecological roles of this strain could provide insights into microbial processes in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria marina
Strainstrain CGMCC 1.9108

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria marina strain CGMCC 1.9108 genome assembly, contig:

Gene Summary

Adenine Count

927639 bp

Thymine Count

931575 bp

Guanine Count

1568044 bp

Cytosine Count

1567964 bp

Genome Length

4995422 bp

Protein-coding Genes

4719 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN04488239_116114Not AvailableNegative3892329 - 389306325855.8
gntr family transcriptional regulator, vanillate catabolism transcriptional regulatorSAMN04488239_116115Not AvailablePositive3893230 - 389395526387.7
aminomethyltransferaseSAMN04488239_116116Not AvailablePositive3893983 - 389538953276.8
trap-type c4-dicarboxylate transport system, substrate-binding proteinSAMN04488239_116117Not AvailablePositive3895540 - 389652033791.9
trap-type c4-dicarboxylate transport system, small permease componentSAMN04488239_116118Not AvailablePositive3896521 - 389703018448.3
trap transporter, dctm subunitSAMN04488239_116119Not AvailablePositive3897027 - 389833145204.5
catechol 2,3-dioxygenaseSAMN04488239_116120Not AvailablePositive3898343 - 389929936092.1
4-oxalomesaconate tautomeraseSAMN04488239_116121Not AvailableNegative3899312 - 390038837090.3
4-hydroxy-4-methyl-2-oxoglutarate aldolaseSAMN04488239_116122Not AvailableNegative3900381 - 390105223404.4
4-oxalomesaconate hydrataseSAMN04488239_116123Not AvailableNegative3901052 - 390178627482.7

Displaying genes 3811 – 3820 of 4786 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.