Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, lysr family | SAMN05444679_102333 | Not Available | Negative | 805678 - 806586 | 33246.7 |
| ferredoxin-nad(p)+ reductase (naphthalene dioxygenase ferredoxin-specific) | SAMN05444679_102334 | Not Available | Positive | 806659 - 807666 | 36426.3 |
| salicylate 5-hydroxylase large subunit | SAMN05444679_102335 | Not Available | Positive | 807696 - 808958 | 48387.6 |
| salicylate 5-hydroxylase small subunit | SAMN05444679_102336 | Not Available | Positive | 808961 - 809434 | 18214.5 |
| naphthalene 1,2-dioxygenase system ferredoxin subunit | SAMN05444679_102337 | Not Available | Positive | 809451 - 809792 | 12345.5 |
| dihydrofolate reductase | SAMN05444679_102338 | Not Available | Negative | 809817 - 810311 | 18426.9 |
| thymidylate synthase | SAMN05444679_102339 | Not Available | Negative | 810315 - 811145 | 31472.4 |
| toxin ccdb | SAMN05444679_102340 | Not Available | Negative | 811147 - 811479 | 12307.9 |
| antitoxin ccda | SAMN05444679_102341 | Not Available | Negative | 811463 - 811732 | 10063.1 |
| fad/fmn-containing dehydrogenase | SAMN05444679_102342 | Not Available | Negative | 811779 - 813203 | 50509.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
