Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug efflux pump subunit acrb | SAMN05444679_13918 | Not Available | Negative | 6647318 - 6650407 | 112610.0 |
| rnd family efflux transporter, mfp subunit | SAMN05444679_13919 | Not Available | Negative | 6650404 - 6651519 | 38919.6 |
| transcriptional regulator, tetr family | SAMN05444679_13920 | Not Available | Negative | 6651604 - 6652257 | 24680.7 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN05444679_13921 | Not Available | Positive | 6652310 - 6653770 | 50860.6 |
| hypothetical protein | SAMN05444679_13922 | Not Available | Negative | 6654114 - 6654836 | 25781.5 |
| two-component system, ompr family, response regulator | SAMN05444679_13923 | Not Available | Negative | 6655110 - 6655787 | 24859.4 |
| nadh dehydrogenase | SAMN05444679_13924 | Not Available | Negative | 6655872 - 6657308 | 51982.8 |
| aldehyde dehydrogenase family protein | SAMN05444679_13925 | Not Available | Negative | 6657331 - 6657906 | 20205.0 |
| integrase core domain-containing protein | SAMN05444679_1401 | Not Available | Positive | 6657907 - 6658126 | 8514.98 |
| hypothetical protein | SAMN05444679_1402 | Not Available | Positive | 6658135 - 6658272 | 5293.44 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
