Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system protein impl | SAMN05444679_12713 | Not Available | Positive | 5927062 - 5930661 | 132389.0 |
| type vi secretion system protein impm | SAMN05444679_12714 | Not Available | Positive | 5930658 - 5931308 | 23712.8 |
| hypothetical protein | SAMN05444679_12715 | Not Available | Positive | 5931364 - 5933238 | 65529.3 |
| membrane-bound lytic murein transglycosylase a | SAMN05444679_12716 | Not Available | Positive | 5933293 - 5934921 | 56891.1 |
| hypothetical protein | SAMN05444679_12717 | Not Available | Positive | 5935159 - 5935923 | 27569.8 |
| hypothetical protein | SAMN05444679_12718 | Not Available | Positive | 5935952 - 5937043 | 38546.5 |
| caspase domain-containing protein | SAMN05444679_12719 | Not Available | Positive | 5937040 - 5939010 | 69838.8 |
| type vi secretion system effector, hcp | SAMN05444679_12720 | Not Available | Positive | 5939020 - 5939574 | 20068.8 |
| type vi secretion system protein impe | SAMN05444679_12721 | Not Available | Positive | 5939583 - 5940386 | 29378.0 |
| type vi secretion system protein impf | SAMN05444679_12722 | Not Available | Positive | 5940379 - 5940894 | 19562.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
