Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit beta | SAMN05444679_12671 | Not Available | Negative | 5891938 - 5893095 | 40588.7 |
| nadph-dependent 2,4-dienoyl-coa reductase, sulfur reductase | SAMN05444679_12672 | Not Available | Negative | 5893092 - 5894483 | 48969.3 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | SAMN05444679_12673 | Not Available | Negative | 5894473 - 5894838 | 12703.3 |
| glycine/d-amino acid oxidase | SAMN05444679_12674 | Not Available | Negative | 5894828 - 5895964 | 40454.0 |
| putative spermidine/putrescine transport system permease protein | SAMN05444679_12675 | Not Available | Negative | 5896011 - 5896805 | 28240.7 |
| putative spermidine/putrescine transport system permease protein | SAMN05444679_12676 | Not Available | Negative | 5896819 - 5897748 | 32943.2 |
| putative spermidine/putrescine transport system atp-binding protein | SAMN05444679_12677 | Not Available | Negative | 5897741 - 5898811 | 39180.7 |
| putative spermidine/putrescine transport system substrate-binding protein | SAMN05444679_12678 | Not Available | Negative | 5898847 - 5899908 | 37891.6 |
| transcriptional regulator, lysr family | SAMN05444679_12679 | Not Available | Positive | 5900094 - 5901002 | 33400.7 |
| hypothetical protein | SAMN05444679_12680 | Not Available | Negative | 5901285 - 5901566 | 9519.62 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
