Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase-4 component f | SAMN05444679_12386 | Not Available | Positive | 5531756 - 5533210 | 52441.7 |
| ni,fe-hydrogenase iii large subunit | SAMN05444679_12387 | Not Available | Positive | 5533215 - 5534768 | 56468.7 |
| ni,fe-hydrogenase iii small subunit | SAMN05444679_12388 | Not Available | Positive | 5534768 - 5535298 | 18860.8 |
| hypothetical protein | SAMN05444679_12389 | Not Available | Positive | 5535301 - 5535588 | 10275.5 |
| hypothetical protein | SAMN05444679_12390 | Not Available | Positive | 5535691 - 5535993 | 11021.1 |
| eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant) | SAMN05444679_12391 | Not Available | Negative | 5536444 - 5537187 | 27598.4 |
| sensor protein | SAMN05444679_12392 | Not Available | Negative | 5537184 - 5539973 | 103854.0 |
| threonine/homoserine efflux transporter rhta | SAMN05444679_12393 | Not Available | Negative | 5540683 - 5541600 | 32678.9 |
| hypothetical protein | SAMN05444679_12394 | Not Available | Negative | 5541952 - 5542146 | 7055.32 |
| hypothetical protein | SAMN05444679_12395 | Not Available | Negative | 5542376 - 5542720 | 12675.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
