Variovorax sp. CF079

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. CF079 is a rod-shaped bacterium characterized by a single replicon, indicating a streamlined genetic structure. The organism is cataloged under the accession number FMZU00000000.1, which serves as a reference for further research and identification. This bacterium belongs to the genus Variovorax, which is known for its versatility and ability to thrive in diverse environments. Members of the Variovorax genus are often studied for their roles in bioremediation and microbial ecology, particularly due to their capacity to degrade various organic compounds. The single replicon in Variovorax sp. CF079 suggests a potential efficiency in replication and genetic stability, which may contribute to its adaptability in fluctuating environmental conditions. Additionally, the rod shape of this bacterium can influence its motility and interaction with surrounding substrates, potentially enhancing its ability to colonize different niches. Understanding the traits of Variovorax sp. CF079 can provide insights into its ecological role, particularly in nutrient cycling and the degradation of pollutants. As a member of a genus known for its metabolic versatility, Variovorax sp. CF079 may play a significant role in ecosystem health, particularly in environments impacted by human activity. Further research could elucidate its specific functions and applications in bioremediation efforts, highlighting the importance of microbial diversity in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. CF079
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. CF079 genome assembly, contig: Ga0115514_171, whole

Gene Summary

Adenine Count

1129990 bp

Thymine Count

1131182 bp

Guanine Count

2291305 bp

Cytosine Count

2293904 bp

Genome Length

6847006 bp

Protein-coding Genes

6686 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heat-inducible transcription repressor hrcaSAMN05444679_115143Not AvailableNegative4227640 - 422864436896.5
nad+ kinaseSAMN05444679_115144Not AvailablePositive4228673 - 422956932069.6
dna repair protein recn (recombination protein n)SAMN05444679_115145Not AvailablePositive4229571 - 423125359853.9
upf0042 nucleotide-binding proteinSAMN05444679_115146Not AvailablePositive4231250 - 423212532699.2
a/g-specific dna-adenine glycosylaseSAMN05444679_115147Not AvailableNegative4232139 - 423317938786.8
dynamin family proteinSAMN05444679_115148Not AvailableNegative4233196 - 423515773005.7
dna-(apurinic or apyrimidinic site) lyaseSAMN05444679_115149Not AvailableNegative4235229 - 423604429717.3
tetratricopeptide repeat-containing proteinSAMN05444679_115150Not AvailablePositive4236126 - 423794966368.5
outer membrane lipoprotein lolbSAMN05444679_115151Not AvailablePositive4237946 - 423843717173.6
4-diphosphocytidyl-2-c-methyl-d-erythritol kinaseSAMN05444679_115152Not AvailablePositive4238434 - 423929430303.5

Displaying genes 4181 – 4190 of 6752 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.