Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion protein k | SAMN05444679_1145 | Not Available | Negative | 3883659 - 3884306 | 24310.8 |
| type iii secretion apparatus lipoprotein, yscj/hrcj family | SAMN05444679_1146 | Not Available | Negative | 3884330 - 3885097 | 27862.9 |
| hypothetical protein | SAMN05444679_1147 | Not Available | Negative | 3885094 - 3885507 | 14231.0 |
| hypothetical protein | SAMN05444679_1148 | Not Available | Negative | 3885568 - 3885771 | 6599.6 |
| type iii secretion protein d | SAMN05444679_1149 | Not Available | Negative | 3885903 - 3887075 | 41699.8 |
| type iii secretion protein c | SAMN05444679_11410 | Not Available | Negative | 3887080 - 3888840 | 62479.0 |
| type iii secretion protein s | SAMN05444679_11411 | Not Available | Negative | 3888837 - 3889103 | 9532.04 |
| type iii secretion protein v | SAMN05444679_11412 | Not Available | Negative | 3889138 - 3891210 | 74890.8 |
| type iii secretion system apparatus protein yscq/hrcq | SAMN05444679_11413 | Not Available | Positive | 3891506 - 3892588 | 39137.6 |
| type iii secretion protein r | SAMN05444679_11414 | Not Available | Positive | 3892614 - 3893273 | 23946.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
