Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv pilus assembly protein pily1 | SAMN05444679_11369 | Not Available | Negative | 3727996 - 3732234 | 151334.0 |
| hypothetical protein | SAMN05444679_11370 | Not Available | Negative | 3732250 - 3732924 | 23418.1 |
| type iv pilus assembly protein pilw | SAMN05444679_11371 | Not Available | Negative | 3732921 - 3734171 | 44009.1 |
| type iv pilus assembly protein pilv | SAMN05444679_11372 | Not Available | Negative | 3734168 - 3734563 | 13788.5 |
| type iv fimbrial biogenesis protein fimt | SAMN05444679_11373 | Not Available | Negative | 3734560 - 3735162 | 20869.9 |
| type iv pilus assembly protein pile | SAMN05444679_11374 | Not Available | Negative | 3735162 - 3735623 | 16425.6 |
| o-antigen ligase | SAMN05444679_11375 | Not Available | Positive | 3735774 - 3737453 | 60458.1 |
| cyclic pyranopterin monophosphate synthase subunit moac | SAMN05444679_11376 | Not Available | Negative | 3737461 - 3737955 | 16724.4 |
| putative zn-dependent protease, contains tpr repeats | SAMN05444679_11377 | Not Available | Positive | 3738010 - 3739584 | 56779.4 |
| putative membrane protein | SAMN05444679_11378 | Not Available | Negative | 3739577 - 3739936 | 12599.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
