Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoquinoline 1-oxidoreductase, beta subunit | SAMN05444679_11289 | Not Available | Positive | 3521282 - 3523519 | 79310.3 |
| two-component system, ompr family, response regulator/two-component system, ompr family, response regulator qseb | SAMN05444679_11290 | Not Available | Positive | 3523577 - 3524236 | 24193.2 |
| two-component system, ompr family, sensor kinase/two-component system, ompr family, sensor histidine kinase qsec | SAMN05444679_11291 | Not Available | Positive | 3524233 - 3525606 | 49784.9 |
| uncharacterized conserved protein, tellurite resistance protein b (terb) family | SAMN05444679_11292 | Not Available | Positive | 3525614 - 3526081 | 17492.0 |
| serine/threonine protein kinase | SAMN05444679_11293 | Not Available | Positive | 3526195 - 3527805 | 56845.3 |
| outer membrane protein ompa | SAMN05444679_11294 | Not Available | Positive | 3527802 - 3529007 | 43069.3 |
| isoquinoline 1-oxidoreductase, beta subunit | SAMN05444679_11295 | Not Available | Negative | 3529013 - 3531259 | 80056.4 |
| isoquinoline 1-oxidoreductase, alpha subunit | SAMN05444679_11296 | Not Available | Negative | 3531270 - 3531743 | 16112.3 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN05444679_11297 | Not Available | Negative | 3531740 - 3532582 | 29795.5 |
| cytochrome c | SAMN05444679_11298 | Not Available | Negative | 3532599 - 3532976 | 12887.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
