Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase | SAMN05444679_109104 | Not Available | Positive | 2799034 - 2800527 | 53632.0 |
| lysophospholipase, alpha-beta hydrolase superfamily | SAMN05444679_109105 | Not Available | Positive | 2800524 - 2801375 | 30334.3 |
| predicted arabinose efflux permease, mfs family | SAMN05444679_109106 | Not Available | Negative | 2801372 - 2802550 | 41155.2 |
| uncharacterized conserved protein yidb, duf937 family | SAMN05444679_109107 | Not Available | Negative | 2802561 - 2803031 | 15155.3 |
| acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase | SAMN05444679_109108 | Not Available | Negative | 2803063 - 2804421 | 47121.8 |
| 16s rrna (uracil1498-n3)-methyltransferase | SAMN05444679_109109 | Not Available | Negative | 2804475 - 2805209 | 26028.6 |
| hypothetical protein | SAMN05444679_109110 | Not Available | Negative | 2805206 - 2806300 | 41177.4 |
| lps-assembly protein | SAMN05444679_109111 | Not Available | Positive | 2806394 - 2808784 | 89179.0 |
| periplasmic chaperone for outer membrane proteins sura | SAMN05444679_109112 | Not Available | Positive | 2808795 - 2810201 | 50809.3 |
| dimethyladenosine transferase | SAMN05444679_109113 | Not Available | Positive | 2810219 - 2810992 | 28529.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
