Variovorax sp. CF079

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. CF079 is a rod-shaped bacterium characterized by a single replicon, indicating a streamlined genetic structure. The organism is cataloged under the accession number FMZU00000000.1, which serves as a reference for further research and identification. This bacterium belongs to the genus Variovorax, which is known for its versatility and ability to thrive in diverse environments. Members of the Variovorax genus are often studied for their roles in bioremediation and microbial ecology, particularly due to their capacity to degrade various organic compounds. The single replicon in Variovorax sp. CF079 suggests a potential efficiency in replication and genetic stability, which may contribute to its adaptability in fluctuating environmental conditions. Additionally, the rod shape of this bacterium can influence its motility and interaction with surrounding substrates, potentially enhancing its ability to colonize different niches. Understanding the traits of Variovorax sp. CF079 can provide insights into its ecological role, particularly in nutrient cycling and the degradation of pollutants. As a member of a genus known for its metabolic versatility, Variovorax sp. CF079 may play a significant role in ecosystem health, particularly in environments impacted by human activity. Further research could elucidate its specific functions and applications in bioremediation efforts, highlighting the importance of microbial diversity in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. CF079
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. CF079 genome assembly, contig: Ga0115514_171, whole

Gene Summary

Adenine Count

1129990 bp

Thymine Count

1131182 bp

Guanine Count

2291305 bp

Cytosine Count

2293904 bp

Genome Length

6847006 bp

Protein-coding Genes

6686 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (kdo 8-p phosphatase)SAMN05444679_10994Not AvailablePositive2791200 - 279174819279.2
lipopolysaccharide export system protein lptcSAMN05444679_10995Not AvailablePositive2791745 - 279239223695.5
short-chain dehydrogenaseSAMN05444679_10996Not AvailablePositive2792389 - 279316227151.9
rna recognition motif. (a.k.a. rrm, rbd, or rnp domain)SAMN05444679_10997Not AvailableNegative2793242 - 279378116624.0
putative ca2+/h+ antiporter, tmem165/gdt1 familySAMN05444679_10998Not AvailablePositive2794223 - 279478920253.4
homoserine o-acetyltransferaseSAMN05444679_10999Not AvailablePositive2794907 - 279606142088.8
methionine biosynthesis protein metwSAMN05444679_109100Not AvailablePositive2796117 - 279670422064.6
uncharacterized protein, yigz familySAMN05444679_109101Not AvailablePositive2796715 - 279731120703.1
protein ccma, bactofilin familySAMN05444679_109102Not AvailablePositive2797563 - 279809618078.4
uncharacterized conserved protein yece, duf72 familySAMN05444679_109103Not AvailableNegative2798109 - 279891529638.2

Displaying genes 2771 – 2780 of 6752 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.