Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system, lytt family, sensor histidine kinase algz | SAMN05444679_108215 | Not Available | Negative | 2649940 - 2651034 | 39127.4 |
| argininosuccinate lyase | SAMN05444679_108216 | Not Available | Positive | 2651062 - 2652459 | 51200.6 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05444679_108217 | Not Available | Positive | 2652606 - 2653457 | 32739.1 |
| udp-glucuronate decarboxylase | SAMN05444679_108218 | Not Available | Positive | 2653484 - 2654455 | 36509.0 |
| udp-glucose dehydrogenase | SAMN05444679_108219 | Not Available | Positive | 2654460 - 2655833 | 49861.6 |
| rhomboid family protein | SAMN05444679_108220 | Not Available | Positive | 2655838 - 2657304 | 54981.6 |
| hypothetical protein | SAMN05444679_108221 | Not Available | Negative | 2657345 - 2658643 | 47998.9 |
| protein of unknown function | SAMN05444679_108222 | Not Available | Negative | 2658697 - 2659290 | 20700.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444679_108223 | Not Available | Positive | 2659378 - 2659971 | 22576.3 |
| anti-sigma-k factor rska | SAMN05444679_108224 | Not Available | Positive | 2659991 - 2660749 | 26731.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
