Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN05444679_108195 | Not Available | Positive | 2619420 - 2620142 | 27788.8 |
| mannose-1-phosphate guanylyltransferase (gdp) /mannose-6-phosphate isomerase, type 2 | SAMN05444679_108196 | Not Available | Positive | 2620139 - 2621575 | 52161.6 |
| gdp-l-fucose synthase | SAMN05444679_108197 | Not Available | Positive | 2621634 - 2622602 | 35758.8 |
| hypothetical protein | SAMN05444679_108198 | Not Available | Positive | 2622633 - 2623607 | 35787.7 |
| hypothetical protein | SAMN05444679_108199 | Not Available | Positive | 2623645 - 2624991 | 48033.7 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05444679_108200 | Not Available | Positive | 2625078 - 2626151 | 39990.8 |
| colanic acid biosynthesis glycosyl transferase wcai | SAMN05444679_108201 | Not Available | Positive | 2626155 - 2627399 | 45429.2 |
| tyrosine-protein kinase etk/wzc | SAMN05444679_108202 | Not Available | Negative | 2627440 - 2629695 | 81654.5 |
| protein-tyrosine phosphatase | SAMN05444679_108203 | Not Available | Negative | 2629695 - 2630138 | 16248.8 |
| polysaccharide export outer membrane protein | SAMN05444679_108204 | Not Available | Negative | 2630146 - 2631306 | 40913.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
