Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase | SAMN05444679_107244 | Not Available | Negative | 2395587 - 2396426 | 30619.2 |
| trap transporter, dctm subunit | SAMN05444679_107245 | Not Available | Negative | 2396465 - 2397724 | 44376.7 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05444679_107246 | Not Available | Negative | 2397727 - 2398242 | 17811.2 |
| tripartite atp-independent transporter solute receptor, dctp family | SAMN05444679_107247 | Not Available | Negative | 2398352 - 2399329 | 35212.5 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05444679_107248 | Not Available | Negative | 2399362 - 2400111 | 25300.8 |
| lysr family transcriptional regulator, glycine cleavage system transcriptional activator | SAMN05444679_107249 | Not Available | Positive | 2400228 - 2401166 | 34613.4 |
| predicted arabinose efflux permease, mfs family | SAMN05444679_107250 | Not Available | Negative | 2401288 - 2402871 | 56056.9 |
| helix-turn-helix domain-containing protein | SAMN05444679_107251 | Not Available | Negative | 2403011 - 2403301 | 9609.62 |
| hypothetical protein | SAMN05444679_107252 | Not Available | Positive | 2403550 - 2403789 | 8048.22 |
| 23s rrna (adenine2503-c2)-methyltransferase | SAMN05444679_107253 | Not Available | Positive | 2403908 - 2404942 | 37942.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
