Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv pilus assembly protein pilq | SAMN05444679_10744 | Not Available | Positive | 2201849 - 2203999 | 76362.3 |
| shikimate kinase | SAMN05444679_10745 | Not Available | Positive | 2204024 - 2204569 | 20049.1 |
| 3-dehydroquinate synthase | SAMN05444679_10746 | Not Available | Positive | 2204606 - 2205706 | 38896.4 |
| dgtpase | SAMN05444679_10747 | Not Available | Positive | 2205723 - 2206856 | 42839.5 |
| cyanate permease | SAMN05444679_10748 | Not Available | Positive | 2206853 - 2208115 | 42381.7 |
| hypothetical protein | SAMN05444679_10749 | Not Available | Positive | 2208112 - 2208687 | 20847.3 |
| methyltransferase domain-containing protein | SAMN05444679_10750 | Not Available | Positive | 2208684 - 2209550 | 32104.8 |
| putative transposase | SAMN05444679_10751 | Not Available | Positive | 2209572 - 2210264 | 25839.9 |
| glutamate synthase (nadh) large subunit | SAMN05444679_10752 | Not Available | Positive | 2210450 - 2215192 | 172649.0 |
| glutamate synthase (nadh) small subunit | SAMN05444679_10753 | Not Available | Positive | 2215361 - 2216839 | 53801.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
