Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfoxide reductase catalytic subunit yedy | SAMN05444679_10734 | Not Available | Positive | 2192550 - 2193548 | 37030.4 |
| sulfoxide reductase heme-binding subunit yedz | SAMN05444679_10735 | Not Available | Positive | 2193550 - 2194275 | 26644.3 |
| diaminopimelate decarboxylase | SAMN05444679_10736 | Not Available | Negative | 2194265 - 2195545 | 45582.5 |
| lipoprotein-attachment site-containing protein | SAMN05444679_10737 | Not Available | Negative | 2195542 - 2195784 | 8289.03 |
| cyay protein | SAMN05444679_10738 | Not Available | Positive | 2195955 - 2196287 | 12223.3 |
| penicillin-binding protein 1a | SAMN05444679_10739 | Not Available | Negative | 2196291 - 2198621 | 84727.4 |
| type iv pilus assembly protein pilm | SAMN05444679_10740 | Not Available | Positive | 2198925 - 2200016 | 39180.9 |
| type iv pilus assembly protein piln | SAMN05444679_10741 | Not Available | Positive | 2200013 - 2200633 | 22632.3 |
| type iv pilus assembly protein pilo | SAMN05444679_10742 | Not Available | Positive | 2200642 - 2201316 | 24824.7 |
| type iv pilus assembly protein pilp | SAMN05444679_10743 | Not Available | Positive | 2201313 - 2201852 | 20026.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
