Variovorax sp. CF079

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. CF079 is a rod-shaped bacterium characterized by a single replicon, indicating a streamlined genetic structure. The organism is cataloged under the accession number FMZU00000000.1, which serves as a reference for further research and identification. This bacterium belongs to the genus Variovorax, which is known for its versatility and ability to thrive in diverse environments. Members of the Variovorax genus are often studied for their roles in bioremediation and microbial ecology, particularly due to their capacity to degrade various organic compounds. The single replicon in Variovorax sp. CF079 suggests a potential efficiency in replication and genetic stability, which may contribute to its adaptability in fluctuating environmental conditions. Additionally, the rod shape of this bacterium can influence its motility and interaction with surrounding substrates, potentially enhancing its ability to colonize different niches. Understanding the traits of Variovorax sp. CF079 can provide insights into its ecological role, particularly in nutrient cycling and the degradation of pollutants. As a member of a genus known for its metabolic versatility, Variovorax sp. CF079 may play a significant role in ecosystem health, particularly in environments impacted by human activity. Further research could elucidate its specific functions and applications in bioremediation efforts, highlighting the importance of microbial diversity in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. CF079
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. CF079 genome assembly, contig: Ga0115514_171, whole

Gene Summary

Adenine Count

1129990 bp

Thymine Count

1131182 bp

Guanine Count

2291305 bp

Cytosine Count

2293904 bp

Genome Length

6847006 bp

Protein-coding Genes

6686 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-gulonate 5-dehydrogenaseSAMN05444679_106132Not AvailableNegative1985625 - 198665936959.7
d-mannonate dehydrataseSAMN05444679_106133Not AvailableNegative1986700 - 198790845193.1
trap transporter, dctm subunitSAMN05444679_106134Not AvailableNegative1987936 - 198979565518.7
tripartite atp-independent transporter solute receptor, dctp familySAMN05444679_106135Not AvailableNegative1989833 - 199085236770.1
fructuronate reductaseSAMN05444679_106136Not AvailableNegative1990902 - 199239853456.0
transcriptional regulator, gntr familySAMN05444679_106137Not AvailablePositive1992551 - 199331228058.7
hypothetical proteinSAMN05444679_106138Not AvailableNegative1993434 - 19936558090.61
glutathione s-transferaseSAMN05444679_106139Not AvailablePositive1994018 - 199482129510.3
16s rrna (cytidine1402-2'-o)-methyltransferaseSAMN05444679_106140Not AvailableNegative1994925 - 199586332620.9
putative endonucleaseSAMN05444679_106141Not AvailablePositive1995904 - 199626012819.4

Displaying genes 1961 – 1970 of 6752 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.