Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen ligase | SAMN05444679_10575 | Not Available | Positive | 1616678 - 1617904 | 45216.4 |
| zinc-finger domain-containing protein | SAMN05444679_10576 | Not Available | Negative | 1617870 - 1618076 | 7437.97 |
| branched chain amino acid aminotransferase apoenzyme | SAMN05444679_10577 | Not Available | Negative | 1618082 - 1619017 | 34497.4 |
| recombination associated protein rdgc | SAMN05444679_10578 | Not Available | Positive | 1619141 - 1620121 | 35611.1 |
| hypothetical protein | SAMN05444679_10579 | Not Available | Negative | 1620138 - 1620617 | 17010.8 |
| dna repair protein rada/sms | SAMN05444679_10580 | Not Available | Negative | 1620641 - 1622032 | 48591.8 |
| homoprotocatechuate degradation operon regulator, hpar | SAMN05444679_10581 | Not Available | Positive | 1622139 - 1622570 | 16351.9 |
| 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | SAMN05444679_10582 | Not Available | Positive | 1622567 - 1623190 | 22088.7 |
| 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | SAMN05444679_10583 | Not Available | Positive | 1623187 - 1623939 | 27594.0 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05444679_10584 | Not Available | Positive | 1623977 - 1624954 | 33946.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
