Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| catechol 2,3-dioxygenase | SAMN05444679_104299 | Not Available | Positive | 1539638 - 1540186 | 20675.4 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05444679_104300 | Not Available | Positive | 1540276 - 1541232 | 33125.2 |
| double zinc ribbon | SAMN05444679_104301 | Not Available | Positive | 1541517 - 1544924 | 124420.0 |
| transcriptional regulator, hxlr family | SAMN05444679_104302 | Not Available | Negative | 1545028 - 1545408 | 13957.1 |
| hypothetical protein | SAMN05444679_104303 | Not Available | Positive | 1545524 - 1546195 | 23472.7 |
| short chain dehydrogenase | SAMN05444679_104304 | Not Available | Positive | 1546350 - 1546456 | 3611.47 |
| elongation factor tu gtp binding domain-containing protein | SAMN05444679_1051 | Not Available | Negative | 1546457 - 1546546 | 3203.91 |
| translation elongation factor 2 (ef-2/ef-g) | SAMN05444679_1052 | Not Available | Negative | 1546654 - 1548753 | 77076.9 |
| ssu ribosomal protein s7p | SAMN05444679_1053 | Not Available | Negative | 1548838 - 1549311 | 17950.2 |
| ssu ribosomal protein s12p | SAMN05444679_1054 | Not Available | Negative | 1549456 - 1549833 | 14004.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
