Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidinol-phosphatase, inositol monophosphatase family | SAMN05444679_104269 | Not Available | Positive | 1511654 - 1512448 | 27848.0 |
| helix-turn-helix domain-containing protein | SAMN05444679_104270 | Not Available | Positive | 1512597 - 1513136 | 19469.6 |
| hypothetical protein | SAMN05444679_104271 | Not Available | Negative | 1513165 - 1513389 | 7610.99 |
| protein of unknown function | SAMN05444679_104272 | Not Available | Positive | 1513507 - 1513701 | 7335.27 |
| glucokinase | SAMN05444679_104273 | Not Available | Positive | 1513706 - 1514632 | 31837.0 |
| dna-binding transcriptional regulator, mocr family, contains an aminotransferase domain | SAMN05444679_104274 | Not Available | Negative | 1514605 - 1516137 | 56035.7 |
| hypothetical protein | SAMN05444679_104275 | Not Available | Positive | 1516320 - 1516637 | 11170.4 |
| trehalose 6-phosphate synthase | SAMN05444679_104276 | Not Available | Negative | 1516634 - 1518019 | 52285.7 |
| glucoamylase (glucan-1,4-alpha-glucosidase), gh15 family | SAMN05444679_104277 | Not Available | Negative | 1518045 - 1519970 | 71323.6 |
| trehalose 6-phosphatase | SAMN05444679_104278 | Not Available | Negative | 1519967 - 1520728 | 27294.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
