Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted chitinase | SAMN05444679_10438 | Not Available | Positive | 1257894 - 1260566 | 98215.3 |
| hypothetical protein | SAMN05444679_10439 | Not Available | Positive | 1260726 - 1261052 | 12043.6 |
| uncharacterized membrane protein | SAMN05444679_10440 | Not Available | Negative | 1261003 - 1261518 | 17792.2 |
| uncharacterized membrane protein | SAMN05444679_10441 | Not Available | Positive | 1261715 - 1262836 | 40746.8 |
| predicted purr-regulated permease perm | SAMN05444679_10442 | Not Available | Negative | 1262849 - 1263982 | 40093.4 |
| dna end-binding protein ku | SAMN05444679_10443 | Not Available | Positive | 1264016 - 1264915 | 32926.7 |
| tetratricopeptide repeat-containing protein | SAMN05444679_10444 | Not Available | Positive | 1264912 - 1265766 | 31537.3 |
| atp-dependent dna ligase ligd phosphoesterase module /atp-dependent dna ligase ligd polymerase module | SAMN05444679_10445 | Not Available | Positive | 1265782 - 1268301 | 93520.5 |
| amino acid abc transporter substrate-binding protein, paat family | SAMN05444679_10446 | Not Available | Positive | 1268516 - 1269316 | 28314.4 |
| protein of unknown function | SAMN05444679_10447 | Not Available | Negative | 1269347 - 1269931 | 21665.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
