Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF079 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1129990 bp
Thymine Count
1131182 bp
Guanine Count
2291305 bp
Cytosine Count
2293904 bp
Genome Length
6847006 bp
Protein-coding Genes
6686 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna helicase/exodeoxyribonuclease v, gamma subunit | SAMN05444679_103109 | Not Available | Negative | 1001180 - 1004689 | 129194.0 |
| dna repair exonuclease sbccd atpase subunit | SAMN05444679_103110 | Not Available | Negative | 1004764 - 1007514 | 99543.0 |
| dna repair exonuclease sbccd nuclease subunit | SAMN05444679_103111 | Not Available | Negative | 1007511 - 1008656 | 41111.8 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN05444679_103112 | Not Available | Negative | 1008958 - 1009947 | 37941.7 |
| transcriptional regulator, alpa family | SAMN05444679_103113 | Not Available | Positive | 1010381 - 1010785 | 15343.6 |
| Trna-arg | Not Available | Not Available | Positive | 1010983 - 1011057 | Not Available |
| hypothetical protein | SAMN05444679_103115 | Not Available | Positive | 1011570 - 1012169 | 22452.5 |
| hypothetical protein | SAMN05444679_103116 | Not Available | Positive | 1012166 - 1012858 | 26090.8 |
| transposase domain | SAMN05444679_103117 | Not Available | Negative | 1013539 - 1013988 | 17103.7 |
| hypothetical protein | SAMN05444679_103118 | Not Available | Positive | 1014756 - 1015559 | 29954.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
