Epibacterium ulvae strain U95

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Epibacterium

Description

Epibacterium ulvae strain U95 is a Gram-negative, aerobic bacterium characterized by its rod shape. It thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, suggesting it is well-suited for moderate environmental conditions. The strain possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation in its ecological niche. The accession number for Epibacterium ulvae strain U95 is FMWG00000000.1, which allows for easy reference and retrieval of its genomic data. This strain's aerobic nature implies that it requires oxygen for growth and metabolism, which may influence its distribution in environments where oxygen is readily available. From a biological and ecological perspective, the traits of Epibacterium ulvae strain U95 suggest that it may play a role in the decomposition of organic matter in its natural habitat. Its mesophilic characteristics could enable it to thrive in environments such as coastal regions or estuarine ecosystems, where organic materials are abundant and oxygen levels are sufficient. Understanding the specific ecological functions and interactions of this strain can provide insights into its role in biogeochemical cycles and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusEpibacterium
SpeciesEpibacterium ulvae
Strainstrain U95

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Epibacterium ulvae strain U95 genome assembly, contig:

Gene Summary

Adenine Count

935133 bp

Thymine Count

950131 bp

Guanine Count

1071311 bp

Cytosine Count

1037494 bp

Genome Length

3994069 bp

Protein-coding Genes

3836 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenaseSAMN04488118_11454Not AvailablePositive3559969 - 356080229797.9
dephospho-coa kinaseSAMN04488118_11455Not AvailablePositive3560799 - 356139222033.6
dna polymerase-3 subunit epsilonSAMN04488118_11456Not AvailablePositive3561385 - 356211626575.6
protein translocase subunit secbSAMN04488118_11457Not AvailableNegative3562168 - 356267718860.6
upf0716 protein fxsaSAMN04488118_11458Not AvailableNegative3562766 - 356327818792.1
predicted lipid-binding transport protein, tim44 familySAMN04488118_11459Not AvailablePositive3563392 - 356404823988.3
membrane-bound lytic murein transglycosylase aSAMN04488118_11460Not AvailablePositive3564045 - 356510038971.7
dna-nicking endonuclease, smr domainSAMN04488118_11461Not AvailablePositive3565101 - 356569721928.9
atp-dependent hsluv protease atp-binding subunit hsluSAMN04488118_11462Not AvailableNegative3565708 - 356701848319.0
hypothetical proteinSAMN04488118_11463Not AvailableNegative3567031 - 356809537671.6

Displaying genes 3441 – 3450 of 3901 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.