Epibacterium ulvae strain U95

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Epibacterium

Description

Epibacterium ulvae strain U95 is a Gram-negative, aerobic bacterium characterized by its rod shape. It thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, suggesting it is well-suited for moderate environmental conditions. The strain possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation in its ecological niche. The accession number for Epibacterium ulvae strain U95 is FMWG00000000.1, which allows for easy reference and retrieval of its genomic data. This strain's aerobic nature implies that it requires oxygen for growth and metabolism, which may influence its distribution in environments where oxygen is readily available. From a biological and ecological perspective, the traits of Epibacterium ulvae strain U95 suggest that it may play a role in the decomposition of organic matter in its natural habitat. Its mesophilic characteristics could enable it to thrive in environments such as coastal regions or estuarine ecosystems, where organic materials are abundant and oxygen levels are sufficient. Understanding the specific ecological functions and interactions of this strain can provide insights into its role in biogeochemical cycles and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusEpibacterium
SpeciesEpibacterium ulvae
Strainstrain U95

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Epibacterium ulvae strain U95 genome assembly, contig:

Gene Summary

Adenine Count

935133 bp

Thymine Count

950131 bp

Guanine Count

1071311 bp

Cytosine Count

1037494 bp

Genome Length

3994069 bp

Protein-coding Genes

3836 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domainSAMN04488118_112103Not AvailableNegative3388293 - 338962449154.2
uncharacterized conserved protein, contains ferritin-like duf455 domainSAMN04488118_112104Not AvailableNegative3389815 - 339067231706.6
peroxiredoxin q/bcpSAMN04488118_112105Not AvailableNegative3390991 - 339147317615.0
asma-like c-terminal regionSAMN04488118_112106Not AvailablePositive3391523 - 3395167128310.0
s-adenosylmethionine:trna ribosyltransferase-isomeraseSAMN04488118_112107Not AvailablePositive3395213 - 339626837972.4
predicted arabinose efflux permease, mfs familySAMN04488118_112108Not AvailablePositive3396453 - 339772744872.4
uncharacterized conserved protein, duf924 familySAMN04488118_112109Not AvailablePositive3397865 - 339844322028.2
dihydrolipoamide dehydrogenaseSAMN04488118_112110Not AvailablePositive3398656 - 340005049552.5
hypothetical proteinSAMN04488118_112111Not AvailablePositive3400431 - 34005564697.67
hth-like domain-containing proteinSAMN04488118_112112Not AvailablePositive3400587 - 340099115775.9

Displaying genes 3291 – 3300 of 3901 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.