Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Afifellaceae
Genus
Afifella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Afifellaceae |
| Genus | Afifella |
| Species | Afifella marina |
| Strain | DSM 2698 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
721670 bp
Thymine Count
734935 bp
Guanine Count
1271881 bp
Cytosine Count
1234935 bp
Genome Length
3963421 bp
Protein-coding Genes
3640 genes
Non-Coding Genes
84 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dimethylglycine dehydrogenase | SAMN03080610_00699 | Not Available | Positive | 743471 - 745987 | 93581.1 |
| predicted nuclease of the rnase h fold, hicb family | SAMN03080610_00700 | Not Available | Positive | 746003 - 746257 | 9060.66 |
| isochorismate pyruvate lyase | SAMN03080610_00701 | Not Available | Positive | 746311 - 746649 | 12987.4 |
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed/haloacid dehalogenase superfamily, subfamily ia, variant 1 with third motif having dx(3-4)d or dx(3-4)e | SAMN03080610_00702 | Not Available | Negative | 746716 - 747486 | 28057.5 |
| protein of unknown function | SAMN03080610_00703 | Not Available | Positive | 747578 - 748396 | 29822.5 |
| transcriptional regulator glxa family, contains an amidase domain and an arac-type dna-binding hth domain | SAMN03080610_00704 | Not Available | Negative | 748412 - 749443 | 38464.4 |
| formate-tetrahydrofolate ligase | SAMN03080610_00705 | Not Available | Positive | 749479 - 751299 | 65127.3 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN03080610_00706 | Not Available | Positive | 751380 - 752138 | 26190.6 |
| flp pilus assembly protein tadd, contains tpr repeats | SAMN03080610_00707 | Not Available | Negative | 752277 - 753926 | 60895.9 |
| mfs transporter, dha2 family, multidrug resistance protein | SAMN03080610_00708 | Not Available | Negative | 754064 - 755611 | 55672.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
