Afifella marina DSM 2698

anaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Afifellaceae

Genus

Afifella

Description

Afifella marina DSM 2698 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This trait is significant as it suggests a specific niche within the microbial community where this organism can survive and proliferate. The bacterium has a single replicon, which is characteristic of certain prokaryotic organisms and can influence its genetic stability and replication processes. The accession number for Afifella marina DSM 2698 is FMVW00000000.1, which serves as a reference for genomic data associated with this strain. This information is essential for researchers looking to explore its genetic makeup and potential functions further. Understanding the anaerobic nature of Afifella marina DSM 2698 provides insights into its ecological role. Such organisms often contribute to biogeochemical cycles, particularly in marine environments where anoxic conditions prevail. Their metabolic processes can impact nutrient cycling and the overall health of the ecosystem, highlighting the importance of studying anaerobic bacteria within diverse habitats. The presence of Afifella marina DSM 2698 in such ecosystems may offer opportunities to explore its potential applications in biotechnology, particularly in processes that require anaerobic conditions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyAfifellaceae
GenusAfifella
SpeciesAfifella marina
StrainDSM 2698

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Afifella marina DSM 2698


Gene Summary

Adenine Count

721670 bp

Thymine Count

734935 bp

Guanine Count

1271881 bp

Cytosine Count

1234935 bp

Genome Length

3963421 bp

Protein-coding Genes

3640 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glucose 1-dehydrogenaseSAMN03080610_03172Not AvailablePositive3400814 - 340162328127.2
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN03080610_03173Not AvailablePositive3401695 - 340248327371.0
holliday junction endonuclease ruvcSAMN03080610_03174Not AvailablePositive3402522 - 340314821589.0
looped-hinge helix dna binding domain-containing protein, abrb familySAMN03080610_03175Not AvailablePositive3403235 - 34034839084.93
hypothetical proteinSAMN03080610_03176Not AvailablePositive3403476 - 340389215775.8
holliday junction dna helicase subunit ruvaSAMN03080610_03177Not AvailablePositive3403889 - 340451521656.1
holliday junction dna helicase subunit ruvbSAMN03080610_03178Not AvailablePositive3404512 - 340556138124.8
(3s)-malyl-coa thioesteraseSAMN03080610_03179Not AvailablePositive3405554 - 340600316554.0
hypothetical proteinSAMN03080610_03180Not AvailableNegative3406008 - 34061454785.67
cell division and transport-associated protein tolqSAMN03080610_03181Not AvailablePositive3406390 - 340710325899.7

Displaying genes 3161 – 3170 of 3724 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.