Afifella marina DSM 2698

anaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Afifellaceae

Genus

Afifella

Description

Afifella marina DSM 2698 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This trait is significant as it suggests a specific niche within the microbial community where this organism can survive and proliferate. The bacterium has a single replicon, which is characteristic of certain prokaryotic organisms and can influence its genetic stability and replication processes. The accession number for Afifella marina DSM 2698 is FMVW00000000.1, which serves as a reference for genomic data associated with this strain. This information is essential for researchers looking to explore its genetic makeup and potential functions further. Understanding the anaerobic nature of Afifella marina DSM 2698 provides insights into its ecological role. Such organisms often contribute to biogeochemical cycles, particularly in marine environments where anoxic conditions prevail. Their metabolic processes can impact nutrient cycling and the overall health of the ecosystem, highlighting the importance of studying anaerobic bacteria within diverse habitats. The presence of Afifella marina DSM 2698 in such ecosystems may offer opportunities to explore its potential applications in biotechnology, particularly in processes that require anaerobic conditions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyAfifellaceae
GenusAfifella
SpeciesAfifella marina
StrainDSM 2698

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Afifella marina DSM 2698 genome assembly, contig:

Gene Summary

Adenine Count

721670 bp

Thymine Count

734935 bp

Guanine Count

1271881 bp

Cytosine Count

1234935 bp

Genome Length

3963421 bp

Protein-coding Genes

3640 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l,d-peptidoglycan transpeptidase ykud, erfk/ybis/ycfs/ynhg familySAMN03080610_01953Not AvailableNegative2075419 - 207607524214.6
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN03080610_01954Not AvailablePositive2076180 - 207686625149.1
cyclic nucleotide-binding domain-containing proteinSAMN03080610_01955Not AvailablePositive2076876 - 207734917322.7
exodeoxyribonuclease-3SAMN03080610_01956Not AvailableNegative2077371 - 207817430175.0
outer membrane lipoprotein-sorting proteinSAMN03080610_01957Not AvailableNegative2078472 - 207911923551.2
dna segregation atpase ftsk/spoiiie, s-dna-t familySAMN03080610_01958Not AvailableNegative2079205 - 208169789489.2
ammonium transporterSAMN03080610_01959Not AvailableNegative2081850 - 208323548167.9
nitrogen regulatory protein p-ii familySAMN03080610_01960Not AvailableNegative2083238 - 208357612097.7
ammonium transporter, amt familySAMN03080610_01961Not AvailableNegative2083937 - 208524444586.9
nitrogen regulatory protein p-ii familySAMN03080610_01962Not AvailableNegative2085277 - 208561512004.5

Displaying genes 1951 – 1960 of 3724 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.