Afifella marina DSM 2698

anaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Afifellaceae

Genus

Afifella

Description

Afifella marina DSM 2698 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This trait is significant as it suggests a specific niche within the microbial community where this organism can survive and proliferate. The bacterium has a single replicon, which is characteristic of certain prokaryotic organisms and can influence its genetic stability and replication processes. The accession number for Afifella marina DSM 2698 is FMVW00000000.1, which serves as a reference for genomic data associated with this strain. This information is essential for researchers looking to explore its genetic makeup and potential functions further. Understanding the anaerobic nature of Afifella marina DSM 2698 provides insights into its ecological role. Such organisms often contribute to biogeochemical cycles, particularly in marine environments where anoxic conditions prevail. Their metabolic processes can impact nutrient cycling and the overall health of the ecosystem, highlighting the importance of studying anaerobic bacteria within diverse habitats. The presence of Afifella marina DSM 2698 in such ecosystems may offer opportunities to explore its potential applications in biotechnology, particularly in processes that require anaerobic conditions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyAfifellaceae
GenusAfifella
SpeciesAfifella marina
StrainDSM 2698

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Afifella marina DSM 2698 genome assembly, contig:

Gene Summary

Adenine Count

721670 bp

Thymine Count

734935 bp

Guanine Count

1271881 bp

Cytosine Count

1234935 bp

Genome Length

3963421 bp

Protein-coding Genes

3640 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribose transport system atp-binding proteinSAMN03080610_01319Not AvailablePositive1393009 - 139452655487.4
ribose transport system permease proteinSAMN03080610_01320Not AvailablePositive1394523 - 139548233235.0
sugar or nucleoside kinase, ribokinase familySAMN03080610_01321Not AvailablePositive1395497 - 139644733711.3
d-tagatose-1,6-bisphosphate aldolase subunit gatz/kbazSAMN03080610_01322Not AvailablePositive1396444 - 139773346160.1
hypothetical proteinSAMN03080610_01323Not AvailableNegative1397833 - 139884636036.5
nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) familySAMN03080610_01324Not AvailablePositive1398981 - 139953820338.5
metal dependent phosphohydrolaseSAMN03080610_01325Not AvailablePositive1399546 - 140012421474.3
putative dna modification/repair radical sam proteinSAMN03080610_01326Not AvailablePositive1400230 - 140144145324.9
dna polymeraseSAMN03080610_01327Not AvailablePositive1401441 - 140290454543.6
tigr00659 family proteinSAMN03080610_01328Not AvailableNegative1402966 - 140367324911.2

Displaying genes 1321 – 1330 of 3724 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.