Thiohalorhabdus denitrificans strain HL 19

rodmicroaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiohalorhabdales

Family

Thiohalorhabdaceae

Genus

Thiohalorhabdus

Description

Thiohalorhabdus denitrificans strain HL 19 is a Gram-negative, non-motile rod bacterium classified as a microaerophile, indicating its requirement for low levels of oxygen for growth. This strain thrives optimally at a temperature of 32°C, placing it within the mesophilic temperature range. The genomic characteristics of Thiohalorhabdus denitrificans HL 19 include a single replicon, which is relevant for understanding its genetic stability and replication processes. Notably, this strain does not form spores, which suggests that it relies on other survival strategies in challenging environmental conditions rather than sporulation. These physiological traits suggest that Thiohalorhabdus denitrificans HL 19 is adapted to specific ecological niches where microaerobic conditions prevail, such as in certain natural or engineered environments rich in sulfur compounds. Its denitrifying capabilities could play a significant role in biogeochemical cycles, particularly in environments where nitrate reduction is essential. Understanding its metabolic processes could contribute to bioremediation efforts or the management of nitrogen in agricultural systems. Overall, the unique adaptations of Thiohalorhabdus denitrificans HL 19 highlight its potential ecological importance in maintaining nitrogen balance and contributing to sulfur cycling in microaerobic habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiohalorhabdales
FamilyThiohalorhabdaceae
GenusThiohalorhabdus
SpeciesThiohalorhabdus denitrificans
Strainstrain HL 19

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperature32
Temperature rangemesophilic
Habitathypersaline habitats
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thiohalorhabdus denitrificans strain HL 19 genome assembly,

Gene Summary

Adenine Count

441900 bp

Thymine Count

454059 bp

Guanine Count

1011202 bp

Cytosine Count

969482 bp

Genome Length

2876643 bp

Protein-coding Genes

2694 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hemerythrin hhe cation binding domain-containing proteinSAMN05661077_2498Not AvailablePositive2435745 - 243619117001.5
uncharacterized membrane protein yqae, homolog of blt101, upf0057 familySAMN05661077_2499Not AvailablePositive2436250 - 24364356736.7
hypothetical proteinSAMN05661077_2500Not AvailablePositive2436481 - 24366816896.89
Tmrna,resume consensus sequence (at 91): gatacctgccgacaacgaNot AvailableNot AvailablePositive2436769 - 2437128Not Available
ssra-binding proteinSAMN05661077_2502Not AvailableNegative2437317 - 243778117785.6
neurotransmitter:na+ symporter, nss familySAMN05661077_2503Not AvailablePositive2437987 - 243965460492.4
ribosome association toxin past (rata) of the ratab toxin-antitoxin moduleSAMN05661077_2504Not AvailablePositive2439716 - 244015317114.7
hypothetical proteinSAMN05661077_2505Not AvailablePositive2440176 - 244051112171.1
beta-barrel assembly machine subunit bameSAMN05661077_2506Not AvailableNegative2440594 - 244094413237.0
fur family transcriptional regulator, ferric uptake regulatorSAMN05661077_2507Not AvailablePositive2441068 - 244149916718.8

Displaying genes 2301 – 2310 of 2743 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.