Thiohalorhabdus denitrificans strain HL 19

rodmicroaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiohalorhabdales

Family

Thiohalorhabdaceae

Genus

Thiohalorhabdus

Description

Thiohalorhabdus denitrificans strain HL 19 is a Gram-negative, non-motile rod bacterium classified as a microaerophile, indicating its requirement for low levels of oxygen for growth. This strain thrives optimally at a temperature of 32°C, placing it within the mesophilic temperature range. The genomic characteristics of Thiohalorhabdus denitrificans HL 19 include a single replicon, which is relevant for understanding its genetic stability and replication processes. Notably, this strain does not form spores, which suggests that it relies on other survival strategies in challenging environmental conditions rather than sporulation. These physiological traits suggest that Thiohalorhabdus denitrificans HL 19 is adapted to specific ecological niches where microaerobic conditions prevail, such as in certain natural or engineered environments rich in sulfur compounds. Its denitrifying capabilities could play a significant role in biogeochemical cycles, particularly in environments where nitrate reduction is essential. Understanding its metabolic processes could contribute to bioremediation efforts or the management of nitrogen in agricultural systems. Overall, the unique adaptations of Thiohalorhabdus denitrificans HL 19 highlight its potential ecological importance in maintaining nitrogen balance and contributing to sulfur cycling in microaerobic habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiohalorhabdales
FamilyThiohalorhabdaceae
GenusThiohalorhabdus
SpeciesThiohalorhabdus denitrificans
Strainstrain HL 19

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperature32
Temperature rangemesophilic
Habitathypersaline habitats
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thiohalorhabdus denitrificans strain HL 19 genome assembly,

Gene Summary

Adenine Count

441900 bp

Thymine Count

454059 bp

Guanine Count

1011202 bp

Cytosine Count

969482 bp

Genome Length

2876643 bp

Protein-coding Genes

2694 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tryptophanyl-trna synthetaseSAMN05661077_1314Not AvailableNegative1207112 - 120828443700.0
zn-dependent protease (includes spoivfb)SAMN05661077_1315Not AvailableNegative1208346 - 120909526460.5
predicted peroxiredoxinSAMN05661077_1316Not AvailablePositive1209293 - 120966713293.0
peptidoglycan-binding protein, csivSAMN05661077_1317Not AvailableNegative1209761 - 121045025550.2
flp pilus assembly protein tadd, contains tpr repeatsSAMN05661077_1318Not AvailableNegative1210447 - 121215663826.9
phosphoserine phosphataseSAMN05661077_1319Not AvailableNegative1212181 - 121335341404.4
transcription-repair coupling factorSAMN05661077_1320Not AvailableNegative1213388 - 1216891130471.0
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseSAMN05661077_1321Not AvailablePositive1217084 - 121779125377.4
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseSAMN05661077_1322Not AvailablePositive1217791 - 121826716083.3
trna pseudouridine13 synthaseSAMN05661077_1323Not AvailablePositive1218264 - 121931037737.0

Displaying genes 1131 – 1140 of 2743 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.