Agrobacterium sp. DSM 25558

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. DSM 25558 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This species has a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability and survival in various environments. The accession number for Agrobacterium sp. DSM 25558 is FMUD00000000.1, which provides a reference for genetic and genomic studies, allowing researchers to explore its genetic makeup and potential applications in biotechnology and agriculture. Agrobacterium species are known for their role in plant interactions, particularly in the context of genetic transformation of plants. This suggests that Agrobacterium sp. DSM 25558 may possess traits relevant to its ecological niche, potentially influencing plant health or contributing to bioremediation processes. Overall, understanding the characteristics of Agrobacterium sp. DSM 25558 can provide insights into its ecological roles and applications in microbial biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. DSM 25558
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. DSM 25558
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium sp. DSM 25558 isolate DSM25558 genome assembly,

Gene Summary

Adenine Count

1246322 bp

Thymine Count

1228652 bp

Guanine Count

1599728 bp

Cytosine Count

1613562 bp

Genome Length

5688264 bp

Protein-coding Genes

5400 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative hth-type transcriptional regulator ytcdDSM25558_4046Not AvailableNegative4182650 - 418302714193.1
nad dependent epimerase/dehydratase family proteinDSM25558_4047Not AvailablePositive4183126 - 418418739201.3
magnesium-protoporphyrin ix monomethyl ester anaerobic oxidative cyclaseDSM25558_4048Not AvailablePositive4184359 - 418591858404.5
atp-dependent clp protease proteolytic subunit precursorDSM25558_4049Not AvailableNegative4185976 - 418655721341.6
hupe / urej proteinDSM25558_4050Not AvailablePositive4186778 - 418736819434.4
hypothetical proteinDSM25558_4051Not AvailablePositive4187477 - 418823225849.1
nadph-dependent 7-cyano-7-deazaguanine reductaseDSM25558_4052Not AvailableNegative4188252 - 418871616919.2
ferrous-iron efflux pump fiefDSM25558_4053Not AvailableNegative4188720 - 418963732404.7
glyoxalase-like domain proteinDSM25558_4054Not AvailableNegative4189784 - 419032320513.4
threonine efflux proteinDSM25558_4055Not AvailableNegative4190510 - 419114522523.4

Displaying genes 4081 – 4090 of 5498 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.