Agrobacterium sp. DSM 25558

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. DSM 25558 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This species has a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability and survival in various environments. The accession number for Agrobacterium sp. DSM 25558 is FMUD00000000.1, which provides a reference for genetic and genomic studies, allowing researchers to explore its genetic makeup and potential applications in biotechnology and agriculture. Agrobacterium species are known for their role in plant interactions, particularly in the context of genetic transformation of plants. This suggests that Agrobacterium sp. DSM 25558 may possess traits relevant to its ecological niche, potentially influencing plant health or contributing to bioremediation processes. Overall, understanding the characteristics of Agrobacterium sp. DSM 25558 can provide insights into its ecological roles and applications in microbial biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. DSM 25558
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. DSM 25558
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium sp. DSM 25558 isolate DSM25558 genome assembly,

Gene Summary

Adenine Count

1246322 bp

Thymine Count

1228652 bp

Guanine Count

1599728 bp

Cytosine Count

1613562 bp

Genome Length

5688264 bp

Protein-coding Genes

5400 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenine deaminase 2DSM25558_3349Not AvailableNegative3420821 - 342261462862.5
pyrimidine-specific ribonucleoside hydrolase rihaDSM25558_3350Not AvailableNegative3422611 - 342353732323.9
spermidine/putrescine import atp-binding protein potaDSM25558_3351Not AvailableNegative3423540 - 342456536422.3
inner membrane abc transporter permease protein ydcvDSM25558_3352Not AvailableNegative3424558 - 342533727854.1
putrescine transport system permease protein pothDSM25558_3353Not AvailableNegative3425334 - 342616129784.7
putrescine-binding periplasmic protein precursorDSM25558_3354Not AvailableNegative3426435 - 342745737007.4
degradation activatorDSM25558_3355Not AvailableNegative3427454 - 342851236221.3
gcv operon activatorDSM25558_3356Not AvailableNegative3428638 - 342954632677.6
acyl-coa dehydrogenaseDSM25558_3357Not AvailablePositive3429643 - 343083043597.4
alpha-ketoglutaric semialdehyde dehydrogenaseDSM25558_3358Not AvailablePositive3431112 - 343254851082.5

Displaying genes 3391 – 3400 of 5498 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.