Agrobacterium sp. DSM 25558

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. DSM 25558 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This species has a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability and survival in various environments. The accession number for Agrobacterium sp. DSM 25558 is FMUD00000000.1, which provides a reference for genetic and genomic studies, allowing researchers to explore its genetic makeup and potential applications in biotechnology and agriculture. Agrobacterium species are known for their role in plant interactions, particularly in the context of genetic transformation of plants. This suggests that Agrobacterium sp. DSM 25558 may possess traits relevant to its ecological niche, potentially influencing plant health or contributing to bioremediation processes. Overall, understanding the characteristics of Agrobacterium sp. DSM 25558 can provide insights into its ecological roles and applications in microbial biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. DSM 25558
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. DSM 25558
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium sp. DSM 25558 isolate DSM25558 genome assembly,

Gene Summary

Adenine Count

1246322 bp

Thymine Count

1228652 bp

Guanine Count

1599728 bp

Cytosine Count

1613562 bp

Genome Length

5688264 bp

Protein-coding Genes

5400 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutathione-binding protein gsib precursorDSM25558_3339Not AvailableNegative3409572 - 341110756225.1
cyn operon transcriptional activatorDSM25558_3340Not AvailableNegative3411195 - 341209432203.3
stage 0 sporulation protein keDSM25558_3341Not AvailableNegative3412251 - 341300027559.1
stage 0 sporulation protein kdDSM25558_3342Not AvailableNegative3412997 - 341383330787.9
putative d,d-dipeptide transport system permease protein ddpcDSM25558_3343Not AvailableNegative3413830 - 341476233052.2
dipeptide transport system permease protein dppbDSM25558_3344Not AvailableNegative3414759 - 341582639368.9
putative d,d-dipeptide-binding periplasmic protein ddpa precursorDSM25558_3345Not AvailableNegative3415845 - 341748559657.9
membrane dipeptidase (peptidase family m19)DSM25558_3346Not AvailableNegative3417523 - 341857837849.3
phosphoribosyltransferaseDSM25558_3347Not AvailableNegative3418734 - 341941124680.0
putative hydrolase yxepDSM25558_3348Not AvailablePositive3419521 - 342069341553.3

Displaying genes 3381 – 3390 of 5498 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.