Agrobacterium sp. DSM 25558

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. DSM 25558 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitate motility. This species has a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability and survival in various environments. The accession number for Agrobacterium sp. DSM 25558 is FMUD00000000.1, which provides a reference for genetic and genomic studies, allowing researchers to explore its genetic makeup and potential applications in biotechnology and agriculture. Agrobacterium species are known for their role in plant interactions, particularly in the context of genetic transformation of plants. This suggests that Agrobacterium sp. DSM 25558 may possess traits relevant to its ecological niche, potentially influencing plant health or contributing to bioremediation processes. Overall, understanding the characteristics of Agrobacterium sp. DSM 25558 can provide insights into its ecological roles and applications in microbial biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. DSM 25558
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. DSM 25558
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium sp. DSM 25558 isolate DSM25558 genome assembly,

Gene Summary

Adenine Count

1246322 bp

Thymine Count

1228652 bp

Guanine Count

1599728 bp

Cytosine Count

1613562 bp

Genome Length

5688264 bp

Protein-coding Genes

5400 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system vgr family proteinDSM25558_2534Not AvailableNegative2602289 - 260367152297.1
type vi secretion system vgr family proteinDSM25558_2535Not AvailableNegative2603672 - 260405814521.5
hypothetical proteinDSM25558_2536Not AvailablePositive2604107 - 26043198260.9
hypothetical proteinDSM25558_2537Not AvailableNegative2604218 - 260471817940.6
type vi secretion system effector, hcp1 familyDSM25558_2538Not AvailableNegative2604855 - 260533117312.3
chaperone protein clpbDSM25558_2539Not AvailableNegative2605393 - 260804495964.9
type vi secretion-associated protein, impa familyDSM25558_2540Not AvailablePositive2608245 - 260932139901.7
type vi secretion protein, familyDSM25558_2541Not AvailablePositive2609388 - 260989719045.8
type vi secretion protein, evpb/ familyDSM25558_2542Not AvailablePositive2610001 - 261148255147.3
type vi secretion protein, evpb/ familyDSM25558_2543Not AvailablePositive2611502 - 261293553160.1

Displaying genes 2581 – 2590 of 5498 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.