Agrobacterium tumefaciens str. CFBP 5771

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. CFBP 5771 is a Gram-negative, rod-shaped bacterium known for its role in plant pathology, particularly in inducing tumors in various host plants, a condition known as crown gall disease. This organism exhibits mobility due to the presence of flagella and is classified as an aerobe, requiring oxygen for its growth. It thrives optimally at 25°C and falls within the mesophilic temperature range. The bacterium is free-living and has a single replicon with a structure consisting of two membranes, characteristic of Gram-negative bacteria. A. tumefaciens interacts with a wide range of hosts within the Viridiplantae kingdom, including economically significant crops such as Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), and Oryza sativa (rice). Other hosts include Arabidopsis, Glycine max (soybean), and even ornamental plants like Ficus benjamina (weeping fig) and Zingiber officinale (ginger). The pathogenicity of A. tumefaciens is primarily due to its ability to transfer DNA to plant cells, leading to the formation of tumors. The health effects associated with this bacterium include various symptoms of crown gall disease, which can detrimentally affect plant growth and yield. In ecological terms, A. tumefaciens plays a significant role in the dynamics of plant-microbe interactions, influencing plant health and agricultural productivity. Understanding its mechanisms of pathogenicity can inform disease management strategies in agriculture, particularly for crops that are susceptible to crown gall tumors.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainCFBP 5771

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. CFBP 5771
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens str. CFBP 5771 genome assembly, contig:

Gene Summary

Adenine Count

1176494 bp

Thymine Count

1164007 bp

Guanine Count

1641189 bp

Cytosine Count

1657053 bp

Genome Length

5638743 bp

Protein-coding Genes

5502 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mfs permeaseAGR1A_Cc20640Not AvailableNegative862622 - 86382141577.4
Gene transfer aget (gta) orfg9-like phage major tail proteinAGR1A_Cc20641Not AvailablePositive863929 - 86433614297.0
conserved hypothetical proteinAGR1A_Cc20642Not AvailablePositive864336 - 86469212248.6
conserved hypothetical proteinAGR1A_Cc20643Not AvailablePositive864689 - 8649108200.91
Putative tail tape measure proteinAGR1A_Cc20644Not AvailablePositive865008 - 86558918963.7
Tail proteinAGR1A_Cc20645Not AvailablePositive865680 - 86631822996.4
Minor tail proteinAGR1A_Cc20646Not AvailablePositive866315 - 86719930928.3
Phage cell wall peptidaseAGR1A_Cc20647Not AvailablePositive867196 - 86763015944.1
Tail proteinAGR1A_Cc20648Not AvailablePositive867648 - 871451136985.0
conserved exported hypothetical proteinAGR1A_Cc20649Not AvailablePositive871486 - 8716927028.61

Displaying genes 11 – 20 of 1410 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total