Agrobacterium tumefaciens str. CFBP 5771

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. CFBP 5771 is a Gram-negative, rod-shaped bacterium known for its role in plant pathology, particularly in inducing tumors in various host plants, a condition known as crown gall disease. This organism exhibits mobility due to the presence of flagella and is classified as an aerobe, requiring oxygen for its growth. It thrives optimally at 25°C and falls within the mesophilic temperature range. The bacterium is free-living and has a single replicon with a structure consisting of two membranes, characteristic of Gram-negative bacteria. A. tumefaciens interacts with a wide range of hosts within the Viridiplantae kingdom, including economically significant crops such as Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), and Oryza sativa (rice). Other hosts include Arabidopsis, Glycine max (soybean), and even ornamental plants like Ficus benjamina (weeping fig) and Zingiber officinale (ginger). The pathogenicity of A. tumefaciens is primarily due to its ability to transfer DNA to plant cells, leading to the formation of tumors. The health effects associated with this bacterium include various symptoms of crown gall disease, which can detrimentally affect plant growth and yield. In ecological terms, A. tumefaciens plays a significant role in the dynamics of plant-microbe interactions, influencing plant health and agricultural productivity. Understanding its mechanisms of pathogenicity can inform disease management strategies in agriculture, particularly for crops that are susceptible to crown gall tumors.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainCFBP 5771

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. CFBP 5771
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens str. CFBP 5771 genome assembly, contig:

Gene Summary

Adenine Count

1176494 bp

Thymine Count

1164007 bp

Guanine Count

1641189 bp

Cytosine Count

1657053 bp

Genome Length

5638743 bp

Protein-coding Genes

5502 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAGR1A_Cc20797Not AvailablePositive1018262 - 10184627964.36
ggdef family proteinAGR1A_Cc20798Not AvailablePositive1018898 - 102083571533.3
putative abc transporter, atp-binding protein with duplicated atpase domainsAGR1A_Cc20799Not AvailableNegative1020861 - 102277469641.3
diguanylate-cyclaseAGR1A_Cc20800Not AvailableNegative1022815 - 102386138097.5
lignin degradation proteinAGR1A_Cc20801Not AvailablePositive1024118 - 102481325770.6
nucleoside diphosphate kinase (ndk) (ndp kinase) (nucleoside-2-p kinase)AGR1A_Cc20802Not AvailablePositive1024917 - 102533915335.3
conserved hypothetical proteinAGR1A_Cc20803Not AvailableNegative1025518 - 102603018574.4
conserved hypothetical proteinAGR1A_Cc20804Not AvailableNegative1026027 - 102657820439.3
branched-chain amino acid abc-type transport system, membrane spanning proteinAGR1A_Cc20805Not AvailablePositive1026638 - 102753431352.8
molybdenum cofactor biosynthesis protein eAGR1A_Cc20806Not AvailableNegative1027595 - 102805016602.7

Displaying genes 1121 – 1130 of 1410 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total